Thank you @avij and @gerald_clark. It was the drive.
I changed the SSD then ran:
yum update then received these warnings, while installing:
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Updating : 1:java-1.7.0-openjdk-headless-1.7.0.55-2.4.7.2.el7_0.x 35/115
warning: /usr/lib/jvm/java-1.7.0-openjdk-1.7.0.55-2.4.7.2.el7_0.x86_64/jre/lib/security/US_export_policy.jar created as /usr/lib/jvm/java-1.7.0-openjdk-1.7.0.55-2.4.7.2.el7_0.x86_64/jre/lib/security/US_export_policy.jar.rpmnew
warning: /usr/lib/jvm/java-1.7.0-openjdk-1.7.0.55-2.4.7.2.el7_0.x86_64/jre/lib/security/local_policy.jar created as /usr/lib/jvm/java-1.7.0-openjdk-1.7.0.55-2.4.7.2.el7_0.x86_64/jre/lib/security/local_policy.jar.rpmnew
installation completed
then ran
dmesg that threw:
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[ 0.979086] ACPI Warning: \_SB_.PCI0.GFX0._DSM: Argument #4 type mismatch - Found [Integer], ACPI requires [Package] (20130517/nsarguments-95)
[ 0.979141] ACPI Warning: \_SB_.PCI0.GFX0._DSM: Argument #4 type mismatch - Found [Buffer], ACPI requires [Package] (20130517/nsarguments-95)
[ 0.979243] ACPI Warning: \_SB_.PCI0.GFX0._DSM: Argument #4 type mismatch - Found [Buffer], ACPI requires [Package] (20130517/nsarguments-95)
[ 0.979340] pci 0000:00:02.0: optimus capabilities: enabled, status dynamic power,
[ 0.979348] ACPI Warning: \_SB_.PCI0.P0P2.PEGP._DSM: Argument #4 type mismatch - Found [Integer], ACPI requires [Package] (20130517/nsarguments-95)
[ 0.979365] ACPI Warning: \_SB_.PCI0.P0P2.PEGP._DSM: Argument #4 type mismatch - Found [Buffer], ACPI requires [Package] (20130517/nsarguments-95)
[ 0.979448] ACPI Warning: \_SB_.PCI0.P0P2.PEGP._DSM: Argument #4 type mismatch - Found [Buffer], ACPI requires [Package] (20130517/nsarguments-95)
[ 0.979530] pci 0000:01:00.0: optimus capabilities: enabled, status dynamic power,
[ 0.979534] VGA switcheroo: detected Optimus DSM method \_SB_.PCI0.P0P2.PEGP handle
[ 0.979550] checking generic (e0000000 300000) vs hw (c0000000 10000000)
[ 0.979551] checking generic (e0000000 300000) vs hw (d0000000 2000000)
[ 0.979561] nouveau 0000:01:00.0: enabling device (0006 -> 0007)
[ 0.979712] [drm] hdmi device not found 1 0 1
...
[ 4.593352] ACPI Warning: SystemIO range 0x0000000000000428-0x000000000000042f conflicts with OpRegion 0x0000000000000400-0x000000000000047f (\_SB_.PCI0.LPCB.PMIO) (20130517/utaddress-254)
[ 4.593360] ACPI: If an ACPI driver is available for this device, you should use it instead of the native driver
[ 4.593364] ACPI Warning: SystemIO range 0x0000000000000540-0x000000000000054f conflicts with OpRegion 0x0000000000000500-0x000000000000054b (\_SB_.PCI0.LPCB.OGIO) (20130517/utaddress-254)
[ 4.593368] ACPI Warning: SystemIO range 0x0000000000000540-0x000000000000054f conflicts with OpRegion 0x0000000000000500-0x000000000000055f (\_SB_.PCI0.P0P2.PEGP.GPIO) (20130517/utaddress-254)
[ 4.593371] ACPI: If an ACPI driver is available for this device, you should use it instead of the native driver
[ 4.593372] ACPI Warning: SystemIO range 0x0000000000000530-0x000000000000053f conflicts with OpRegion 0x0000000000000500-0x000000000000054b (\_SB_.PCI0.LPCB.OGIO) (20130517/utaddress-254)
[ 4.593375] ACPI Warning: SystemIO range 0x0000000000000530-0x000000000000053f conflicts with OpRegion 0x0000000000000500-0x000000000000055f (\_SB_.PCI0.P0P2.PEGP.GPIO) (20130517/utaddress-254)
[ 4.593378] ACPI: If an ACPI driver is available for this device, you should use it instead of the native driver
[ 4.593379] ACPI Warning: SystemIO range 0x0000000000000500-0x000000000000052f conflicts with OpRegion 0x0000000000000500-0x000000000000054b (\_SB_.PCI0.LPCB.OGIO) (20130517/utaddress-254)
[ 4.593382] ACPI Warning: SystemIO range 0x0000000000000500-0x000000000000052f conflicts with OpRegion 0x0000000000000500-0x000000000000055f (\_SB_.PCI0.P0P2.PEGP.GPIO) (20130517/utaddress-254)
[ 4.593385] ACPI: If an ACPI driver is available for this device, you should use it instead of the native driver
...
[ 300.630784] mce: [Hardware Error]: Machine check events logged
[ 303.853483] SELinux: initialized (dev binfmt_misc, type binfmt_misc), uses genfs_contexts
[ 305.405550] xor: automatically using best checksumming function:
[ 305.414934] avx : 25248.000 MB/sec
[ 305.432954] raid6: sse2x1 9023 MB/s
[ 305.449982] raid6: sse2x2 9503 MB/s
[ 305.466992] raid6: sse2x4 11695 MB/s
[ 305.466995] raid6: using algorithm sse2x4 (11695 MB/s)
[ 305.466996] raid6: using ssse3x2 recovery algorithm
[ 305.483350] bio: create slab <bio-2> at 2
[ 305.483688] Btrfs loaded
[ 305.489242] fuse init (API version 7.22)
[ 305.497489] SELinux: initialized (dev fusectl, type fusectl), uses genfs_contexts
[ 305.716530] XFS (sdb1): Mounting Filesystem
[ 305.853454] XFS (sdb1): recovery required on read-only device.
[ 305.853464] XFS (sdb1): write access unavailable, cannot proceed.
[ 305.853469] XFS (sdb1): log mount/recovery failed: error 30
[ 305.853526] XFS (sdb1): log mount failed
[ 306.283745] nr_pdflush_threads exported in /proc is scheduled for removal
[ 306.283864] sysctl: The scan_unevictable_pages sysctl/node-interface has been disabled for lack of a legitimate use case. If you have one, please send an email to linux-mm@kvack.org.
[ 582.924002] CPU2: Core temperature above threshold, cpu clock throttled (total events = 3000)
[ 582.924003] CPU3: Core temperature above threshold, cpu clock throttled (total events = 2999)
[ 582.924005] CPU1: Package temperature above threshold, cpu clock throttled (total events = 3198)
[ 582.924006] CPU0: Package temperature above threshold, cpu clock throttled (total events = 3197)
[ 582.924007] CPU3: Package temperature above threshold, cpu clock throttled (total events = 3198)
[ 582.924013] CPU2: Package temperature above threshold, cpu clock throttled (total events = 3199)
[ 582.929994] CPU0: Package temperature/speed normal
[ 582.929995] CPU3: Core temperature/speed normal
[ 582.929996] CPU2: Core temperature/speed normal
[ 582.929997] CPU1: Package temperature/speed normal
[ 582.929997] CPU3: Package temperature/speed normal
[ 582.929998] CPU2: Package temperature/speed normal
[ 600.995928] mce: [Hardware Error]: Machine check events logged
[ 606.771867] XFS (sdb1): Mounting Filesystem
[ 606.936135] XFS (sdb1): recovery required on read-only device.
[ 606.936140] XFS (sdb1): write access unavailable, cannot proceed.
[ 606.936142] XFS (sdb1): log mount/recovery failed: error 30
[ 606.936202] XFS (sdb1): log mount failed
[ 1174.687092] CPU3: Core temperature above threshold, cpu clock throttled (total events = 7100)
[ 1174.687094] CPU0: Package temperature above threshold, cpu clock throttled (total events = 7506)
[ 1174.687095] CPU1: Package temperature above threshold, cpu clock throttled (total events = 7507)
[ 1174.687096] CPU2: Core temperature above threshold, cpu clock throttled (total events = 7101)
[ 1174.687098] CPU2: Package temperature above threshold, cpu clock throttled (total events = 7508)
[ 1174.687102] CPU3: Package temperature above threshold, cpu clock throttled (total events = 7507)
[ 1174.688128] CPU3: Core temperature/speed normal
[ 1174.688128] CPU2: Core temperature/speed normal
[ 1174.688130] CPU2: Package temperature/speed normal
[ 1174.688133] CPU3: Package temperature/speed normal
[ 1174.688158] CPU0: Package temperature/speed normal
[ 1174.688159] CPU1: Package temperature/speed normal
[ 1197.941024] SELinux: 2048 avtab hash slots, 100030 rules.
[ 1197.950566] SELinux: 2048 avtab hash slots, 100030 rules.
[ 1197.964223] SELinux: 8 users, 86 roles, 4808 types, 281 bools, 1 sens, 1024 cats
[ 1197.964227] SELinux: 83 classes, 100030 rules
[ 1198.189782] SELinux: Context root:staff_r:sandbox_t:s0-s0:c0.c1023 became invalid (unmapped).
[ 1198.599362] SELinux: Context system_u:unconfined_r:sandbox_t:s0-s0:c0.c1023 became invalid (unmapped).
[ 1198.824038] SELinux: Context root:sysadm_r:sandbox_t:s0-s0:c0.c1023 became invalid (unmapped).
[ 1198.990684] SELinux: Context root:unconfined_r:sandbox_t:s0-s0:c0.c1023 became invalid (unmapped).
[ 1199.049696] SELinux: Context unconfined_u:unconfined_r:sandbox_t:s0-s0:c0.c1023 became invalid (unmapped).
[ 1201.820248] mce: [Hardware Error]: Machine check events logged
[ 1208.044836] XFS (sdb1): Mounting Filesystem
[ 1208.225550] XFS (sdb1): recovery required on read-only device.
[ 1208.225554] XFS (sdb1): write access unavailable, cannot proceed.
[ 1208.225556] XFS (sdb1): log mount/recovery failed: error 30
[ 1208.225622] XFS (sdb1): log mount failed
I am not sure where to update the ACPI drivers or what failed in the logs as I am not sure what to look for.
ran
yum groupinstall "Development Tools", which was successful!